lars von trier: melancholia, dancer in the dark, breaking the waves
ingmar bergman: persona, cries and whispers, through a glass darkly
david lynch: inland empire, mulholland drive, eraserhead
incidentally, stanley kubrick and abbas kiarostami are the other two who would absolutely have three films in my top 85 (all the movies i've rated at least "incredible"). bela tarr, werner herzog, jacques rivette and robert bresson would all have a chance at rounding out the top 100 if i could be bothered constructing a list.